Naruto: The Broken Bond continued developments Naruto: Rise of a Ninja. Now Naruto has become a respected and powerful hero in battle, he proved his excellence ninja and has grown considerably in the eyes of others. However, rest on our laurels is not the time - Naruto to battle with his best friend Sasuke, who envy overshadowed insane. Your task - to stand in the dangerous fight and save the lost soul.

The movie begins with a heroine previously unknown in the Naruto continuity: Princess Fuun (Princess Gale in the US version). Fuun's nemesis, Mao, challenges her group with an army of undead soldiers. His dark intentions seem to prevail, that is, until Princess Gale and her cohorts, Shishimaru, Brit, and Tsukuyaku, unleash the power of the Seven-Colour-Chakra upon him. They save the day, and Naruto, watching from afar, couldn't be more elated.

The movie opens with a battle taking place at night on a desolate seaside beach between Sand Ninja and mysterious warriors wearing bulky suits of armor. Despite their best efforts, the Sand Ninja are slowly overwhelmed by the sheer strength of their mysterious opponents. The timely arrival of reinforcements led by Kankuro and Gaara turns the tide, with Kankuro slicing apart a suit of armor with his puppet, and Gaara dispatching a large number of enemies en mass with his signature Desert Imperial Funeral. However when Gaara orders the Sand Ninja to shine a flare at the retreating enemies, a large warship appears. The ship then opens fire with its guns, and Gaara's sand armor barely manages to protect his comrades.

A mysterious group of ninja called the Sora-nin from the Sky Country makes a surprise attack on Konoha. This is because Konoha nearly destroyed the Sky Country during the last Shinobi World War. However, they survived and now are after Konoha and the Fire Country for revenge.

The group starts attacking Konoha causing mass mayhem, with flying ninjas on winged-mechanical devices bombarding the village. A boy comes all the way to inform Konoha that his village had been attacked and he was looking for his sensei, who was currently in Konoha, to go with him to heal the injured at his village.

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Demons that once almost destroyed the world, are revived by someone. To prevent the world from being destroyed, the demon has to be sealed and the only one who can do it is the shrine maiden Shion from the country of demons, who has two powers; one is sealing demons and the other is predicting the deaths of humans. This time Naruto's mission is to guard Shion, but she predicts Naruto's death. The only way to escape it, is to get away from Shion, which would leave her unguarded, then the demon, whose only goal is to kill Shion will do so, thus meaning the end of the world. Naruto decides to challenge this "prediction of death", but fails to prove Shion's prediction wrong and supposedly dies in vain.

On a game plot, four fighters Naruto get in the mysterious illusive lock suddenly formed near to confidential village of a ninjia and exhausting vital energy from its inhabitants. They should pass 100 levels of the lock and to battle to more than 20 kinds of enemies, using a combo-attack, blows in flight and various receptions to understand, for what the woman ruling the lock in a mask so does not love them.